Installers for all platforms can be downloaded from https://github.com/dongzhang0725/PhyloSuite/releases.
Windows 7, 8 and 10 are supported, just double click the
PhyloSuite_xxx_win_setup.exe to install, and run “PhyloSuite.exe” file after the installation. If the installation fails, download
PhyloSuite_xxx_Win64/32.rar, unzip it, and run PhyloSuite directly from this folder.
PhyloSuite_xxx_Mac.zip/PhyloSuite_xxx_Linux.tar.gz to anywhere you like, and double click “PhyloSuite” (in PhyloSuite folder) to start, or use the following command:
If you encounter an error of “permission denied”, try to use the following command:
Note that both 64 bit and 32 bit Windows is supported (Windows 7 and above), whereas only 64 bit has been tested in Linux (Ubuntu 18.04.6 LTS) and Mac OSX (macOS Sierra version 10.12.3 and above).
We strongly encourage you to use conda to install PhyloSuite in Linux (see section 3), especially for version 1.2.3.
First, Python (version 3.6) should be installed and added to the environment variable in your computer. Then open the terminal and type:
pip install PhyloSuite==1.2.3rc3
It will take some time to install. If it installs successfully, PhyloSuite will be automatically added to the environment variables. Then open the terminal again and type:
First, Miniconda3 (https://docs.conda.io/en/latest/miniconda.html) should be installed and added to the environment variable in your computer. Then open the terminal and create an evironment for python 3.6:
conda create -n py367 python=3.6.7
Now you can install PhyloSuite using "py367" environment:
conda activate py367
It will take some time to install. If it installs successfully, PhyloSuite will be installed into
[Miniconda_installation_path]/envs/py367/bin folder and will be automatically added to the environment variables. Then open the terminal again and type:
conda activate py367 # execute this if you are not in py367 environment
If the above
conda command failed to install PhyloSuite, you can use compiled PhyloSuite (see
section 1) or find and download the source codes here (https://pypi.org/project/PhyloSuite/#files or https://github.com/dongzhang0725/PhyloSuite), and install it manually.